j-andrews7
Follow
Stars
A powerful document AI question-answering tool that connects to your local Ollama models. Create, manage, and interact with RAG systems for all your document needs.
Reproducible slice module for teal applications
Shiny apps for NGS etc based on reusable components created using Shiny modules
roxygen2 extensions for shinylive
Exploratory Web Apps for Analyzing Clinical Trial Data
Deploying an R Shiny Application in Quarto with Shinylive (No Shiny Server Required)
Deploy nf-core bioinformatics pipelines on Open OnDemand
An R package for classifying, comparing, and investigating sub-region structural changes of (super) enhancers (or other large domains).
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
plotthis is an R package that is built upon ggplot2 and other plotting packages.
Materials for short, half-day workshops
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
A Comprehensive Toolkit for High-Quality PDF Content Extraction
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.
1 min voice data can also be used to train a good TTS model! (few shot voice cloning)
Color blindness friendly visualization of any data in a data.frame format. Like dittoSeq, but not omics-structure restricted
Get up and running with OpenAI gpt-oss, DeepSeek-R1, Gemma 3 and other models.
A curated list of modern Generative Artificial Intelligence projects and services
Repository for managing contributions to workshop.bioconductor.org
The Generative AI Landscape - A Collection of Awesome Generative AI Applications
Framework for sensitive DE testing (using neighbourhoods)
Get barcode counts from functional genomics screens
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
Transcription Factor Co-Occurrence using Market Basket analysis