Genotype networks drive oscillating endemicity and epidemic trajectories in viral

Genotype networks drive oscillating endemicity and epidemic trajectories in viral evolution

  • Santiago Lamata-Otín
  • Octavian C. Rotita-Ion
  • Jesús Gómez-Gardeñes
Article

Announcements

  • bring together research from diverse aspects of physical biology, focusing on the interplay of physical laws and bacterial behaviour and physiology.

    We welcome submissions of original research, perspectives, and review articles highlighting the growing toolbox where simulations, high-precision experiments, and data-driven models converge on measurable, designable odd responses in soft systems.

    Open for submissions
  • Shiladitya Sengupta's headshot

    Shiladitya Sengupta is an Assistant Professor in the Department of Physics at the Indian Institute of Technology Roorkee. His research focuses on mechanical response of amorphous solids, physics of glass transition and dynamics of supercooled liquids, using tools of statistical physics and large scale computer simulation.

  • Image credit: © imageBROKER/Hulya Koca/imageBROKER/Gettyimages

    With this cross-journal Collection, the editors at Nature Communications, Communications Physics, npj Complexity and npj Systems Biology and Applications invite manuscripts that focus on approaches that use nonlinear dynamical systems to uncover organizing principles in living systems, together with experiments that are explicitly interpreted through such frameworks.

    Open for submissions
  • metrics

    Communications Physics has a 2-year impact factor of 5.8 (2024), a median decision times of 7 days to first editorial decision and 158 days from submission to acceptance.

Advertisement

  • Molten Carbon, existing only at extremely high temperatures and high pressures, has an exotic collective dynamic behavior. The authors reveal, via ab initio and machine-learning computer simulations, an unusual two-peak shape of longitudinal current spectral functions, which are related to two types of collective excitations.

    • Taras Bryk
    • Giancarlo Ruocco
    • Noël Jakse
    ArticleOpen Access
  • Under compression, fluid-filled cylindrical shells, such as soda cans, exhibit localized axisymmetric corrugations which appear sequentially but are evenly spaced once the surface is fully decorated. Here, the authors demonstrate how the pattern formation process underpinning this buckling phenomenon depends on material nonlinearities, offering insights that could inform the design of resilient cylindrical structures.

    • Shresht Jain
    • Finn Box
    • Draga Pihler-Puzović
    ArticleOpen Access
  • Sensitivity to small changes is essential for organisms to make timely and reliable decisions, but operating near criticality also amplifies fluctuations and hinders information accumulation. Here, the authors show that when information is integrated over a finite time, as in biological readouts, the optimal sensitivity for a given integration time is achieved away from criticality, approaching criticality only as longer integration becomes available.

    • Sahel Azizpour
    • Viola Priesemann
    • Anna Levina
    ArticleOpen Access
  • Network dismantling, crucial for optimizing systems like immunization and rumor control, faces challenges in integrating higher-order structures to identify key nodes. Here, the authors introduce a Higher-order Graph Neural Network framework, demonstrating superior efficiency and resilience in dismantling networks by accurately targeting minimal nodes, impacting fields from ecology to cybersecurity.

    • Wennan Zhou
    • Suoyi Tan
    • Xiang Zhao
    ArticleOpen Access
  • The superconducting diode effect describes non-reciprocal transport of the superconducting current and there is focus on how to engineer and apply this property practically. Here, the authors utilise a heterostructure to implement a dual-mode superconducting diode effect, where dissipationless current flows along a single direction, that can be activated by both out-of-plane and in-plane magnetic field. The dual modes share similar diode efficiency but requires different magnitude of magnetic field to be operated.

    • Huai Guan
    • Chengyu Yan
    • Shun Wang
    ArticleOpen Access
  • The concept of distance in graphs and hypergraphs faces challenges when extended to weighted hypergraphs due to potential inconsistencies. The authors propose a well-defined distance measure for weighted hypergraphs and demonstrate its applicability on real-world datasets, showing that the use of the measure may help to avoid the information loss typically arising when standard approaches are used.

    • Charo. I. del Genio
    • Ekaterina Vasilyeva
    • Stefano Boccaletti
    ArticleOpen Access
  • Collective failure poses a significant challenge to sustaining cooperation in various systems. Here, the authors demonstrate that adaptively raising collective targets after success or increasing rewards after failure effectively maintains cooperation across different risk levels, offering a dynamic governance strategy with broad implications for enhancing collaborative efforts.

    • Mingquan Xu
    • Shijia Hua
    • Attila Szolnoki
    ArticleOpen Access
  • Criticality and percolation in dynamical systems are widely studied, yet whether they can emerge from purely deterministic interactions and control parameters remains unclear. Here, the authors reveal deterministic critical points associated with percolation and self-organized criticality in the logistic Game of Life, advancing the understanding of emergent scale invariance in deterministic systems.

    • Hakan Akgün
    • Xianquan Yan
    • Seymur Jahangirov
    ArticleOpen Access
  • Shortcuts to adiabaticity are essential for rapid state evolution, and their true power lies in restoring adiabaticity against nonadiabatic transitions. Here, the authors employ an enhanced framework that restores adiabaticity in coupled elastic waveguides by simultaneously optimizing the parameter-space path and velocity, enabling efficient wave control in compact devices.

    • Dong Liu
    • Yiran Hao
    • Jensen Li
    ArticleOpen Access

Advertisement

Nature Careers

Science jobs

Advertisement