broadinstitute / infercnv
Inferring CNV from Single-Cell RNA-Seq
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Inferring CNV from Single-Cell RNA-Seq
R toolkit for single cell genomics
R toolkit for the analysis of single-cell chromatin data
NicheNet: predict active ligand-target links between interacting cells
📊 A universal enrichment tool for interpreting omics data
'ggplot2' Based Publication Ready Plots
Dynamic Documents for R
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Fast, sensitive and accurate integration of single-cell data with Harmony
Simple Features for R
GCAM -- The Global Change Analysis Model