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vcf
Here are 166 public repositories matching this topic...
Structural variant toolkit for VCFs
benchmarking data-science bioinformatics genomics sequencing vcf annotation-tool structural-variation vcf-comparison sv-merging
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Jul 24, 2025 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics snps medicine genomics genome cancer biology vcf ensembl medical cancer-genomics genome-annotation proteomics gtf bed cancer-genomes genome-sequencing genome-browser genomes csv-parser
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Oct 12, 2023 - Python
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
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Jul 7, 2023 - Python
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
bioinformatics rna-seq deep-learning biology gene-expression vcf artificial-intelligence transformer rnaseq rna dna-sequences uce evo2 pre-training pre-trained-model foundation-models scgpt geneformer transcriptformer helixmrna
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Aug 1, 2025 - Python
Bayesian genotyper for structural variants
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Mar 6, 2021 - Python
Python 3 library with good support for both reading and writing VCF
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Jun 25, 2024 - Python
tools for reading, writing, merging, and remapping SNPs
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Mar 22, 2025 - Python
Python API for comprehensive GWAS analysis using GEMMA
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Sep 6, 2023 - Python
🔧 Simple script in python to convert CSV files to VCF
python converter csv tools script phone-number contacts python3 vcf vcard email-template contact moduland phonebook contacts-app variant-calls contacts-manager comma-separated-values contacts-book phonebooks
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Mar 22, 2024 - Python
vembrane filters VCF records using python expressions
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Jul 23, 2025 - Python
Generic human DNA variant annotation pipeline
docker workflow gene singularity vcf variants snv vep disease-gene-association indels annotation-tool vcfanno germline variant-annotations annotation-framework snvs
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Feb 13, 2024 - Python
A python parser to simplify and build the VCF (Variant Call Format).
converts vcf tableview haplotypes vcftools variant-annotation phasing vcf-files python-parser phase-extender phase-stitcher chrom
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Oct 30, 2024 - Python
Convert GWAS summary statistics to VCF
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Mar 11, 2023 - Python
Genomic VCF to tab-separated values
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Mar 9, 2023 - Python
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