base-depth become extremely slow when calculating highly covered site. #59

Position 21:8215302 on GRCh38 (Ensembl ref) is used for debugging. When calculating this single site, whose depth is ~10k ,the command took more than 10min and still not finish.

perbase base-depth -m -t 16 -r Homo_sapiens.GRCh38.genome.fa debug.bam

debug.tar.gz