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Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Pull Sharkx4Achievement: Arctic Code Vault Contributor

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priesgo/README.md

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👋 Hola! I’m a bioinformatician interested on variant calling, cancer genomics, immunogenomics and as of lately SARS-CoV-2. I work at the not for profit research institute TRON (https://tron-mainz.de/) and I am eager to contribute on open source projects.

I have done quite a bit of R, but as of lately I am mostly active in Python and Java. Also I am dedicating quite some time to develop bioinformatic pipelines in Nextflow.

Feel free to contact me: priesgoferreiro@gmail.com

Mastodon Follow Linkedin: pablo-riesgo-ferreiro GitHub Thaiane

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  1. TRON-Bioinformatics/neofox TRON-Bioinformatics/neofox Public

    Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors

    Python 34 6

  2. TRON-Bioinformatics/covigator TRON-Bioinformatics/covigator Public

    CoVigator - Monitoring SARS-CoV-2 mutations

    Python 11 1

  3. TRON-Bioinformatics/tronflow-mutect2 TRON-Bioinformatics/tronflow-mutect2 Public

    Nextflow pipeline for Mutect2 somatic variant calling best practices

    Nextflow 22 5

  4. TRON-Bioinformatics/covigator-ngs-pipeline TRON-Bioinformatics/covigator-ngs-pipeline Public

    A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

    Nextflow 20 8

  5. TRON-Bioinformatics/vafator TRON-Bioinformatics/vafator Public

    Annotate variants in a VCF file with technical annotations from one or more BAMs

    Jupyter Notebook 9

  6. TRON-Bioinformatics/omicron-analysis TRON-Bioinformatics/omicron-analysis Public

    Analysis code, data and figures on the omicron MHC binding paper

    Jupyter Notebook 2 1