Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

Spiritual successor to picard for sequencing qc

fastVEP: High-performance Variant Effect Predictor in Rust

Bioinformatics I/O libraries in Rust

A manifesto for AI-assisted modernisation of bioinformatics software.

Fast genomics quality control tools for sequencing data, written in Rust.

High-performance UMI tools for NGS data analysis

Generate beautiful API documentation for Nextflow pipelines

FRASER - Find RAre Splicing Events in RNA-seq

A free, open-source web app for visualizing splice junctions, expression, and other sequencing data genome-wide using IGV.js

Git for genomes

Track Nextflow strict syntax linting health across nf-core pipelines

VCF visualization interface

A Java API for high-throughput sequencing data (HTS) formats.

STR genotyping with WGS and Amplicon/Target sequencing data

A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.

End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.

Use various fgbio functions and classes in your Nextflow scope.

Nextflow runs monitoring and organisation UI

Aligns short reads using dynamic seed size with strobemers

Command line tool for Wave containers provisioning service

Nextflow project to be developed for the micro-credential VIB/UGent - Reproducble analysis

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Where new ideas for nf-core pipelines, special interest groups and more are proposed

Call select base modifications in PacBio HiFi reads

Joint structural variant and copy number variant caller for HiFi sequencing data

Structural variant (SV) analysis tools