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1. phylovi/bito phylovi/bito Public

   Python-interface C++ library for Bayesian phylogenetics via optimization

   C++ 40 10

2. pplacer pplacer Public

   Phylogenetic placement and downstream analysis

   OCaml 89 21

3. matsengrp/netam matsengrp/netam Public

   Neural networks to model BCR affinity maturation

   Python 8 2

4. matsengrp/larch matsengrp/larch Public

   Inference and manipulation of history DAGs

   C++ 2 2