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1. cysdb_app cysdb_app Public

   Integrating chemoproteomics, protein structures, and functional annotations to understand the role of cysteines in the human proteome

   Jupyter Notebook 3 3

2. oncomatch_app oncomatch_app Public

   Forked from BioITHackathons/DrugCentral-Based-Review-and-Profiles-of-Targets-for-Approved-Drugs

   Framework designed to support the matching of cancer subtypes with potential drug combinations through the integration of genomic, proteomic, and chemical data

   Jupyter Notebook

3. ms_cpdaa_analysis ms_cpdaa_analysis Public

   Mass spectrometry-based chemoproteomics pipeline for analyzing electrophile selectivity and identifying chemoproteomics detected amino acids (CpDAAs)

   Python 1 2

4. ciaa_model ciaa_model Public

   Structure-based machine learning framework for de novo prediction of functional cysteines for protein engineering

   Jupyter Notebook

5. protein_structure_annotations protein_structure_annotations Public

   Map residue numbers from experimental protein structures to primary protein sequences and calculate the relative solvent accessibility of each residue

   Python 2

6. residue_function_annotations residue_function_annotations Public

   Identify small-molecule sites of labeling that are annotated as active sites, binding sites, disulfide bonds and redox active sites

   Jupyter Notebook 2