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  • Massachusetts General Hospital/Broad Institute
  • US

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lch14forever/README.md

Hi πŸ‘‹, I'm Chenhao Li (ζŽι™ˆζ΅©)

GIF

Github | Twitter | Google Scholar | ORCID

  • πŸ” A postdoc at Massachusetts General Hospital and Broad Institute

  • πŸ§‘πŸ»β€πŸ’» A computational biologist working with high-throughput sequencing data

  • 🧫 Study the gut microbiome and its interactions with the host

  • ❓ Interested in the uncharacterized functional space of the gut microbes

  • ❓ Interested in the spatial-temporal dynamics of the gut microbes

Popular repositories Loading

  1. microbiomeViz microbiomeViz Public

    Visualize microbiome data with black magic ggtree

    R 68 14

  2. beem-static beem-static Public

    πŸ“¦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

    R 10 8

  3. NGS_scripts NGS_scripts Public

    Scripts for NGS analysis

    Python 4 2

  4. BEEM BEEM Public

    BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data

    Jupyter Notebook 4 4

  5. hospital_microbiome hospital_microbiome Public

    HTML 3 9

  6. minion_live_basecall minion_live_basecall Public archive

    Minion live basecalling optimized for GIS's cluster

    Python 2