Skip to content

eliopato/pylluminator-data

Repository files navigation

Welcome to pylluminator-data

You'll find here the scripts used to generate the data required by pylluminator, and the data itself. The data is generated from R package SeSAMe. The manifest is directly created from data downloaded here, and the genome information is extracted from the R objects.

The scripts create_manifest.py and create_genome_infos.r will generate the data as .csv files in the folder _generated_data. The versioned and compressed data used by pylluminator is found in folders annotations, arrays, and genome_info. To move the generated data to the versioned folders and compress it, run the update_data.py script.

More details about the data files can be found in the pylluminator documentation

About

Metadata used to process Illumina Infinium DNA methylation data with pylluminator

Topics

Resources

License

Stars

Watchers

Forks