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Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow 418 1,073 Updated Jul 1, 2026

Simple test framework for Nextflow pipelines

Java 188 44 Updated Apr 27, 2026

Nextflow training material

Nextflow 252 320 Updated Jun 23, 2026

Automated spike sorting and curation; event extraction and synchronization

Python 6 Updated Jun 23, 2024

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 518 80 Updated May 21, 2026

Run your GitHub Actions locally 🚀

Go 70,899 1,961 Updated Jul 1, 2026

Aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript 1,467 673 Updated Jun 29, 2026

The developer platform for on-demand cloud development environments to create software faster and more securely.

TypeScript 13,736 1,392 Updated Jun 29, 2026

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Nextflow 578 538 Updated Jun 30, 2026

Meta-chromosome genome files and scripts

1 Updated Apr 30, 2021

A DSL for data-driven computational pipelines

Groovy 3,426 786 Updated Jul 1, 2026

Nanopore demultiplexing, QC and alignment pipeline

Nextflow 227 104 Updated Apr 30, 2026

Medical Genetics Sequence Analysis Pipelines

PHP 91 23 Updated Jun 30, 2026