Issues

• Add specialist / generalist niche-breadth qualifiers parameterised by METPO trait category

  enhancement
  berkeleybop/metpo#635 · Filter by author realmarcin opened on Sep 17, 2026

• Flagellar arrangement values: six missing sources, one over-broad source, a polytrichous/lophotrichous overlap, and a process xref on the axis

  berkeleybop/metpo#631 · Filter by author turbomam opened on Sep 3, 2026

• Decide: two asserted parents for the flagellar arrangement values (as merged) or a single path with the axis under flagellated

  berkeleybop/metpo#630 · Filter by author turbomam opened on Sep 3, 2026
  

• Default the release to INCLUDE_OBSOLETE=false; keep obsolete terms only in metpo-full

  berkeleybop/metpo#627 · Filter by author turbomam opened on Sep 3, 2026

• September 2026 cleanup: what is moving, who owns it, and where we need your call

  berkeleybop/metpo#626 · Filter by author turbomam opened on Sep 3, 2026

• Delete the 274 six-digit rows in deprecated.tsv that duplicate seven-digit obsolete terms

  berkeleybop/metpo#624 · Filter by author turbomam opened on Sep 3, 2026

• Record the eleven never-built Sheet-only identifiers in deprecated.tsv so they are never reused

  berkeleybop/metpo#623 · Filter by author turbomam opened on Sep 3, 2026

• Add a subset column to the templates and declare metpo_proposal_2026_04 as a subset; 31 rows currently record it in the comment field

  berkeleybop/metpo#620 · Filter by author turbomam opened on Sep 3, 2026

• Add an xrefs column to the class and property templates; 8 rows currently hide xrefs in the comment field

  berkeleybop/metpo#619 · Filter by author turbomam opened on Sep 3, 2026

• Decide whether METPO imports RO and NCBITaxon; it gates logical definitions for pathogen and habitat classes

  berkeleybop/metpo#617 · Filter by author turbomam opened on Sep 3, 2026
  1

• The last two releases carry no assets, and nothing documents which artifact consumers should pin

  berkeleybop/metpo#615 · Filter by author realmarcin opened on Sep 1, 2026

• Exact-synonym overloading is not confined to 'mesophilic': 18 keys resolve to 2-9 active classes

  berkeleybop/metpo#614 · Filter by author realmarcin opened on Sep 1, 2026

• Binned quantitative classes have overlapping boundaries: 41 boundaries across 10 series admit two classes for one value

  berkeleybop/metpo#608 · Filter by author realmarcin opened on Aug 10, 2026

• run.sh defaults ODK_TAG to 'latest' while the Makefile pins v1.6.1; builds can drift silently

  berkeleybop/metpo#604 · Filter by author turbomam opened on Jul 31, 2026

• Make the committed TSVs the source of truth and retire the Google Sheet as a build input

  berkeleybop/metpo#602 · Filter by author turbomam opened on Jul 31, 2026

• Stop merging deprecated terms into the released OWL; keep the archive repo-side only

  berkeleybop/metpo#600 · Filter by author turbomam opened on Jul 31, 2026
  1

• Make existing security/quality CI checks required in branch protection

  berkeleybop/metpo#584 · Filter by author turbomam opened on Jul 21, 2026

• Adopt group best-practice scaffolding (github-ai-integrations drop-in, editorconfig, templates)

  berkeleybop/metpo#583 · Filter by author turbomam opened on Jul 21, 2026

• cross_ontology_search.embed(): rate-limit the failure warning and keep graceful fallback for read-phase errors

  berkeleybop/metpo#548 · Filter by author turbomam opened on Jun 17, 2026

• metpo.Makefile: sheets-config warning log writes an untracked file into src/templates/ on every make

  berkeleybop/metpo#547 · Filter by author turbomam opened on Jun 17, 2026

• TraitMech → METPO: adopt 143 classes + 13 predicates (ROBOT templates, cohorts v1–v6)

  berkeleybop/metpo#535 · Filter by author realmarcin opened on Jun 14, 2026
  1

• Add source URLs to the four database names in dcterms:description

  berkeleybop/metpo#534 · Filter by author turbomam opened on Jun 12, 2026

• Nine proposed terms cannot be cleanly reused: six class endpoints lack per-organism granularity, three numeric datatype properties absent

  berkeleybop/metpo#528 · Filter by author realmarcin opened on Jun 10, 2026
  2

• Umbrella: establish a standing QC rhythm (CI gates + weekly digest + scheduled agentic review + periodic OLS load)

  berkeleybop/metpo#523 · Filter by author turbomam opened on Jun 8, 2026

• Write definitions for the ~171 terms that lack IAO:0000115

  berkeleybop/metpo#522 · Filter by author turbomam opened on Jun 8, 2026