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1. figures_in_R figures_in_R Public

   Code chunks for generating different figures in R.

   R 2

2. bulkrnaseq_deseq2 bulkrnaseq_deseq2 Public

   Generalized script for DESeq2 analysis of gene counts matrix from nf-core/rnaseq pipeline

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3. code_snippets code_snippets Public

   Repo for small bits of functional code. Mostly for personal reference or for things I need to use frequently/don't want to forget.

   Shell

4. rna_velocity_basic rna_velocity_basic Public

   Basic RNA velocity analysis using velocyto (spliced/unspliced counts), Seurat (to get UMAP coords and other metadata), and scVelo (RNA velocity analysis and figures)

   Python

5. Nebulosa Nebulosa Public

   Forked from powellgenomicslab/Nebulosa

   R package to visualize gene expression data based on weighted kernel density estimation

   R

6. DoubletFinder DoubletFinder Public

   Forked from chris-mcginnis-ucsf/DoubletFinder

   R package for detecting doublets in single-cell RNA sequencing data

   R