Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

Protein Sequence Embedding in Complex Space

De novo assembly of SARS-CoV-2 genome

Automated tool for fetching all articles in a target language to construct language-specific corpora.

Command line tool for the Mermaid library

VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment

Implementation of https://doi.org/10.1016/j.ygeno.2022.110414

Go library for accessing the GitHub v3 API

The Postgres development platform. Supabase gives you a dedicated Postgres database to build your web, mobile, and AI applications.

ITP Course Programming from A to Z Fall 2020

Awesome datasets for Bangla language computing.

NeMo text processing for ASR and TTS

A framework for building native applications using React

A full-stack framework for Laravel that takes the pain out of building dynamic UIs.

Secure hash functions, checksum generators, and key derivation algorithms in pure Dart

SearXNG is a free internet metasearch engine which aggregates results from various search services and databases. Users are neither tracked nor profiled.

scikit-learn: machine learning in Python

Pipeline components for real-time phylodynamic analysis

Data and analysis for NA12878 genome on nanopore

Simple nextflow script to run de-novo assembly on nanopore data with Flye and polishing the assembly with medaka.

A simple nextflow script to run iteratively pilon for polishing long read contigs with Illumina reads

IQ-TREE software version 2: phylogenetics by maximum likelihood

Making whole bacterial genome sequencing data analysis easy

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Split Kmer Analysis

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Hands-On Genetic Algorithms with Python, Published by Packt

The complete sequence of a human genome