Conda recipes for the bioconda channel.

QC pipeline to inspect your sequences

Python package with helper tools for the nf-core community.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A command line utilty for working with BINSEQ files

The Atomic UI framework for Nuxt, powered by Unocss engine 💛

Where new ideas for nf-core pipelines, special interest groups and more are proposed

Code and files for the main nf-core website.

Wordpress theme and plugins for ngisweden.se

Anglerfish - Nanopore reads from Illumina libraries

A web-based publications reference database system.

Your repo reached a stars milestone? Celebrate with a video of your stargazers!

A small example pipeline used to test new nf-core infrastructure and common code.

Aggregate results from bioinformatics analyses across many samples into a single report.

Repository to host tool-specific module files for the Nextflow DSL2 community!

Per-base per-nucleotide depth analysis

UMI aware mark (optical) duplicates in NGS sequencing BAM

Agent app that allows connecting remote batch schedulers to Tower Cloud

Retrieval Augmented Generation (RAG) chatbot powered by Weaviate

Test data for MultiQC.

Converts bam or cram files to fastq format and does quality control.

API to access Scilifelab Data Centre's delivery portal. On development

Turn the draft into amazing artwork with the power of Real-Time Latent Consistency Model