How to fix when the amplitude modulated signal reaches the peak, the bottom follows too?
The reason the "bottom follows too" is that the output of your circuit contains both an AM signal and an amplified version of the modulating signal. You need to attenuate the modulating signal component of the output as much as possible, while only attenuating the AM component only a little.
C2 and R5 of your circuit form a high pass filter. To attenuate the modulating signal from the output, the cutoff frequency should be near the carrier frequency.
I have change the values of R2 and R3 accordingly.

simulate this circuit – Schematic created using CircuitLab
A second problem that I encountered with the circuit is that the gain was too high, leading to clipping. The signal at the collector of Q1 needs to look something like this:

However, instead of looking like that, it was clipped at Vcc and 0.7V. That is, the transistor I used went into saturation and cutoff. This caused significant distortion in the output.
So, I reduced the gain by doubling R1.
I also increased the capacitance of C3 so that the frequency of the R1 * C3 pair was closer to that of the modulating frequency. This allows more of the carrier signal to bypass R1.
(The signal voltages were also tuned).
With these changes, the output looks like this:

Not perfect, because it still contains a noticeable component of amplified modulating signal. That can be seen by the fact that the output is still a bit asymmetric about the 0V axis. But it is much closer to a proper AM signal. A second filter stage would improve the output more.