Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
-
Updated
Nov 25, 2025 - Python
#
bioimaging
Here are 43 public repositories matching this topic...
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
python c-plus-plus cross-platform image-processing stitching high-performance-computing tomography image-analysis brain-imaging bioimage-informatics cluster-computing computing-cluster bioimaging bioimage-analysis 3d-images non-rigid-registration non-rigid-stitching
-
Updated
Jun 25, 2025 - C++
Discover, install, and share napari plugins
python tracking machine-learning deep-learning analysis detection plugins themes registration segmentation imaging denoising bioimaging napari-plugin napari
-
Updated
Oct 28, 2025 - TypeScript
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
-
Updated
Nov 18, 2025 - Python
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis
-
Updated
Sep 23, 2025 - R
R package for visualization of highly multiplexed imaging data
-
Updated
May 27, 2025 - R
Python libraries for loading, running and packaging bioimage.io models
-
Updated
Nov 25, 2025 - Jupyter Notebook
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
python slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
-
Updated
Dec 1, 2025 - Python
An introduction to OME-Zarr for big bioimaging data
-
Updated
Nov 24, 2025 - Python
Python 3 x-ray simulator
-
Updated
Jan 26, 2019 - Jupyter Notebook
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
-
Updated
Mar 24, 2025 - Python
A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.
visualization https s3 scientific-visualization bioimaging scivis ome-zarr ome-ngff aws-open-dataset
-
Updated
Nov 14, 2025 - Python
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images
bioinformatics deep-neural-networks deep-learning artificial-intelligence healthcare bioimaging covid-19
-
Updated
Nov 16, 2020 - Jupyter Notebook
TileDB BioImaging plugin for Napari
-
Updated
Feb 4, 2025 - Python
Visualisation software for imaging mass cytometry data
-
Updated
Feb 22, 2023 - Rust
3D volume rendering software for fluorescence microscopy
-
Updated
May 18, 2024 - Swift
Scripts for use with BIOMERO
slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
-
Updated
Dec 1, 2025 - Python
Zarr Homepage
-
Updated
Nov 27, 2025 - JavaScript
A Python3 Radial Image Analysis Toolkit
image-processing image-segmentation image-analysis microscopy hacktoberfest bioimaging format-conversion-tool
-
Updated
Feb 4, 2022 - Python
Improve this page
Add a description, image, and links to the bioimaging topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the bioimaging topic, visit your repo's landing page and select "manage topics."