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Ultra-low Dose PET Imaging Challenge

This is an example of the PET imaging is used to recovere high-quality imaging from low dose scans imaging.

Prerequisities

The following dependencies are needed:

  • numpy >= 1.11.1
  • SimpleITK >=1.0.1
  • pytorch-gpu ==1.10.0
  • pandas >=0.20.1
  • scikit-learn >= 0.17.1

How to Use

  • 1、when download the all project,check out the data folder all csv,put your train data into same folder.or you can run lowdosePet2022data3dprepare.py to generate train data and validation data.
  • 2、run lowdosePet_train.py for Unet3d training:make sure train data have effective path
  • 3、run lowdosePet_inference.py for Unet3d inference:make sure validation data have effective path
  • 4、run lowdosePet_inferencetest.py for Unet3d inference test:make sure test data have effective path

Result

1-2 dose predict result

1-4 dose predict result

1-10 dose predict result

1-20 dose predict result

1-50 dose predict result

1-100 dose predict result

  • you can find the trained model in log folder.
  • more detail and trained model can follow my WeChat Public article.

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low dose PET Imaing

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