lint fix. (#445)

* lint fix to use string interpolation.

* more string interpolation.

* more string interpolation.

Author: TimothyStiles

io/slow5/slow5_test.go

@@ -103,7 +103,7 @@ func testParseReadsHelper(t *testing.T, fileTarget string, errorMessage string)
 		}
 	}
 	if len(targetErr) == 0 {
-		t.Errorf(errorMessage)
+		t.Errorf("Test failed: %s", errorMessage)
 	}
 }
 

seqhash/seqhash_test.go

@@ -35,33 +35,33 @@ func TestHash(t *testing.T) {
 	// Test circular double stranded hashing
 	seqhash, _ := Hash("TTAGCCCAT", "DNA", true, true)
 	if seqhash != "v1_DCD_a376845b679740014f3eb501429b45e592ecc32a6ba8ba922cbe99217f6e9287" {
-		t.Errorf("Circular double stranded hashing failed. Expected v1_DCD_a376845b679740014f3eb501429b45e592ecc32a6ba8ba922cbe99217f6e9287, got: " + seqhash)
+		t.Errorf("Circular double stranded hashing failed. Expected v1_DCD_a376845b679740014f3eb501429b45e592ecc32a6ba8ba922cbe99217f6e9287, got: %s", seqhash)
 	}
 	// Test circular single stranded hashing
 	seqhash, _ = Hash("TTAGCCCAT", "DNA", true, false)
 	if seqhash != "v1_DCS_ef79b6e62394e22a176942dfc6a5e62eeef7b5281ffcb2686ecde208ec836ba4" {
-		t.Errorf("Circular single stranded hashing failed. Expected v1_DCS_ef79b6e62394e22a176942dfc6a5e62eeef7b5281ffcb2686ecde208ec836ba4, got: " + seqhash)
+		t.Errorf("Circular single stranded hashing failed. Expected v1_DCS_ef79b6e62394e22a176942dfc6a5e62eeef7b5281ffcb2686ecde208ec836ba4, got: %s", seqhash)
 	}
 	// Test linear double stranded hashing
 	seqhash, _ = Hash("TTAGCCCAT", "DNA", false, true)
 	if seqhash != "v1_DLD_c2c9fc44df72035082a152e94b04492182331bc3be2f62729d203e072211bdbf" {
-		t.Errorf("Linear double stranded hashing failed. Expected v1_DLD_c2c9fc44df72035082a152e94b04492182331bc3be2f62729d203e072211bdbf, got: " + seqhash)
+		t.Errorf("Linear double stranded hashing failed. Expected v1_DLD_c2c9fc44df72035082a152e94b04492182331bc3be2f62729d203e072211bdbf, got: %s", seqhash)
 	}
 	// Test linear single stranded hashing
 	seqhash, _ = Hash("TTAGCCCAT", "DNA", false, false)
 	if seqhash != "v1_DLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967" {
-		t.Errorf("Linear single stranded hashing failed. Expected v1_DLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967, got: " + seqhash)
+		t.Errorf("Linear single stranded hashing failed. Expected v1_DLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967, got: %s", seqhash)
 	}
 
 	// Test RNA Seqhash
 	seqhash, _ = Hash("TTAGCCCAT", "RNA", false, false)
 	if seqhash != "v1_RLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967" {
-		t.Errorf("Linear single stranded hashing failed. Expected v1_RLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967, got: " + seqhash)
+		t.Errorf("Linear single stranded hashing failed. Expected v1_RLS_063ea37d1154351639f9a48546bdae62fd8a3c18f3d3d3061060c9a55352d967, got: %s", seqhash)
 	}
 	// Test Protein Seqhash
 	seqhash, _ = Hash("MGC*", "PROTEIN", false, false)
 	if seqhash != "v1_PLS_922ec11f5227ce77a42f07f565a7a1a479772b5cf3f1f6e93afc5ecbc0fd5955" {
-		t.Errorf("Linear single stranded hashing failed. Expected v1_PLS_922ec11f5227ce77a42f07f565a7a1a479772b5cf3f1f6e93afc5ecbc0fd5955, got: " + seqhash)
+		t.Errorf(`Linear single stranded hashing failed. Expected v1_PLS_922ec11f5227ce77a42f07f565a7a1a479772b5cf3f1f6e93afc5ecbc0fd5955, got: %s`, seqhash)
 	}
 }
 

synthesis/fix/synthesis_test.go

@@ -48,11 +48,11 @@ func BenchmarkCds(b *testing.B) {
 		for _, cutSite := range []string{"GAAGAC", "GGTCTC", "GCGATG", "CGTCTC", "GCTCTTC", "CACCTGC"} {
 			if strings.Contains(optimizedSeq, cutSite) {
 				fmt.Println(changes)
-				b.Errorf("phusion" + " contains " + cutSite)
+				b.Errorf("phusion contains %s", cutSite)
 			}
 			if strings.Contains(transform.ReverseComplement(optimizedSeq), cutSite) {
 				fmt.Println(changes)
-				b.Errorf("phusion" + " reverse complement contains " + cutSite)
+				b.Errorf("phusion reverse complement contains %s", cutSite)
 			}
 		}
 	}
@@ -84,10 +84,10 @@ func TestCds(t *testing.T) {
 
 	for _, cutSite := range []string{"GAAGAC", "GGTCTC", "GCGATG", "CGTCTC", "GCTCTTC", "CACCTGC"} {
 		if strings.Contains(optimizedSeq, cutSite) {
-			t.Errorf("phusion" + " contains " + cutSite)
+			t.Errorf("phusion contains %s", cutSite)
 		}
 		if strings.Contains(transform.ReverseComplement(optimizedSeq), cutSite) {
-			t.Errorf("phusion" + " reverse complement contains " + cutSite)
+			t.Errorf("phusion reverse complement contains %s", cutSite)
 		}
 	}
 

synthesis/fragment/fragment_test.go

@@ -9,7 +9,7 @@ func TestFragment(t *testing.T) {
 
 	_, _, err := Fragment(gene, 90, 110, []string{})
 	if err != nil {
-		t.Errorf(err.Error())
+		t.Error(err.Error())
 	}
 }
 
@@ -18,7 +18,7 @@ func TestUnfragmentable(t *testing.T) {
 	polyA := "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"
 	_, _, err := Fragment(polyA, 40, 80, []string{})
 	if err == nil {
-		t.Errorf("polyA should fail to fragment")
+		t.Error("polyA should fail to fragment")
 	}
 }
 
@@ -27,12 +27,12 @@ func TestFragmentSizes(t *testing.T) {
 	lacZ := "ATGACCATGATTACGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAG"
 	_, _, err := Fragment(lacZ, 105, 95, []string{})
 	if err == nil {
-		t.Errorf("Fragment should fail when minFragmentSize > maxFragmentSize")
+		t.Error("Fragment should fail when minFragmentSize > maxFragmentSize")
 	}
 
 	_, _, err = Fragment(lacZ, 7, 95, []string{})
 	if err == nil {
-		t.Errorf("Fragment should fail when minFragmentSize < 8")
+		t.Error("Fragment should fail when minFragmentSize < 8")
 	}
 }
 
@@ -51,7 +51,7 @@ func TestLongFragment(t *testing.T) {
 	gene := "GGAGGGTCTCAATGCTGGACGATCGCAAATTCAGCGAACAGGAGCTGGTCCGTCGCAACAAATACAAAACGCTGGTCGAGCAAAACAAAGACCCGTACAAGATTACGAACTGGAAACGCAATACCACCCTGCTGAAACTGAATGAGAAATACAAAGACTATAGCAAGGAGGACCTGTTGAACCTGAATCAAGAACTGGTCGTTGTTGCAGGTCGTATCAAACTGTATCGTGAAGCCGGTAAAAAAGCTGCCTTTGTGAACATTGATGATCAAGACTCCTCTATTCAGTTGTACGTGCGCCTGGATGAGATCGGTGATCAGAGCTTCGAGGATTTCCGCAATTTCGACCTGGGTGACATCATTGGTGTTAAAGGTATCATGATGCGCACCGACCACGGCGAGTTGAGCATCCGTTGTAAGGAAGTCGTGCTGCTGAGCAAGGCCCTGCGTCCGCTGCCGGATAAACACGCGGGCATTCAGGATATTGAGGAAAAGTACCGCCGTCGCTATGTGGACCTGATTATGAATCACGACGTGCGCAAGACGTTCCAGGCGCGTACCAAGATCATTCGTACCTTGCAAAACTTTCTGGATAATAAGGGTTACATGGAGGTCGAAACCCCGATCCTGCATAGCCTGAAGGGTGGCGCGAGCGCGAAACCGTTTATTACCCACTACAATGTGCTGAATACGGATGTGTATCTGCGTATCGCGACCGAGCTGCACCTGAAACGCCTGATTGTTGGCGGTTTCGAGGGTGTGTATGAGATCGGTCGCATCTTTCGCAATGAAGGTATGTCCACGCGTCACAATCCGGAATTCACGTCTATCGAACTGTATGTCGCCTATGAGGACATGTTCTTTTTGATGGATCTGACCGAAGAGATTTTTCGCGTTTGTAATGCCGCAGTCAACAGCTCCAGCATCATTGAGTATAACAACGTGAAAATTGACCTGAGCAAGCCGTTTAAGCGCCTGCATATGGTTGACGGTATTAAACAGGTGACCGGCGTCGACTTCTGGCAGGAGATGACGGTCCAACAGGCTCTGGAGCTGGCCAAAAAGCATAAAGTGCACGTTGAAAAACATCAAGAGTCTGTTGGTCACATTATCAATTTGTTCTATGAGGAGTTCGTGGAGTCCACGATTGTTGAGCCGACGTTCGTGTACGGTCACCCGAAGGAAATCTCTCCGCTGGCTAAGAGCAATCCGTCTGACCCGCGTTTCACGGACCGTTTCGAGCTGTTCATTCTGGGTCGTGAGTATGCGAATGCGTTTAGCGAGCTGAATGACCCGATTGACCAGTACGAACGCTTCAAGGCTCAGATTGAGGAGGAAAGCAAGGGCAACGATGAAGCCAACGACATGGACATTGATTTCATCGAGGCTCTGGAACACGCCATGCCGCCGACCGCGGGTATTGGTATCGGCATTGATCGCTTGGTTATGCTGCTGACGAATAGCGAATCCATCAAAGACGTGCTGTTGTTCCCGCAAATGAAGCCGCGCGAATGAAGAGCTTAGAGACCCGCT"
 	frags, _, err := Fragment(gene, 79, 94, []string{})
 	if err != nil {
-		t.Errorf(err.Error())
+		t.Error(err.Error())
 	}
 	for _, frag := range frags {
 		if len(frag) > 94 {
@@ -72,7 +72,7 @@ func TestCheckLongRegresssion(t *testing.T) {
 		}
 	}
 	if foundGTCT {
-		t.Errorf("Should not have found GTCT since it is the reverse complement of AGAC")
+		t.Error("Should not have found GTCT since it is the reverse complement of AGAC")
 	}
 }
 
@@ -92,6 +92,6 @@ func TestFragmentWithOverhangs(t *testing.T) {
 
 	_, _, err := FragmentWithOverhangs(gene, 90, 110, []string{}, defaultOverhangs)
 	if err != nil {
-		t.Errorf(err.Error())
+		t.Error(err.Error())
 	}
 }