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New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics

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Yuri Victorovich 2021-04-19 21:20:35 -07:00
commit b9f16eadc9
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1
biology/Makefile
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@ -143,6 +143,7 @@
SUBDIR += py-pandas-charm
SUBDIR += py-pyfaidx
SUBDIR += py-pysam
SUBDIR += py-resdk
SUBDIR += py-scikit-bio
SUBDIR += py-xenaPython
SUBDIR += pyfasta

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biology/py-resdk/Makefile Normal file
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@ -0,0 +1,28 @@
PORTNAME= resdk
DISTVERSION= 13.1.0
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics
LICENSE= BSD3CLAUSE
RUN_DEPENDS= \
${PYTHON_PKGNAMEPREFIX}openpyxl>0:textproc/py-openpyxl@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pytz>=2018.4:devel/py-pytz@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}requests>=2.6.0:www/py-requests@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}slumber>=0.7.1:www/py-slumber@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}tzlocal>=1.5.1:devel/py-tzlocal@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR}
USES= python:3.6+
USE_PYTHON= distutils autoplist
NO_ARCH= yes
.include <bsd.port.mk>

3
biology/py-resdk/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1618889698
SHA256 (resdk-13.1.0.tar.gz) = b1348484e93f93184574dab3677816b5a0e76ccbb25aab0fc1cf1728142ae7ce
SIZE (resdk-13.1.0.tar.gz) = 219876

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biology/py-resdk/pkg-descr Normal file
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@ -0,0 +1,6 @@
Resolwe SDK for Python supports interaction with Resolwe server and its
extension Resolwe Bioinformatics. You can use it to upload and inspect
biomedical data sets, contribute annotations, run analysis, and write
pipelines.
WWW: https://github.com/genialis/resolwe-bio-py